New review paper on the future of tropical biodiversity

Out in Nature this week: “The future of hyperdiverse tropical ecosystems”. We were happy to contribute to a broad review of the importance of the hyperdiverse tropics to global biodiversity, ongoing threats to tropical biodiversity, as well as strategies to help mediate those threats. Particularly pleased to see ants being used as an exemplar taxon alongside birds and mammals and the rest, a main goal of our (and many others’) efforts over these last years. This stunning photo was taken by the late Rodrigo Baleia.

Proceratium in China

We have a new paper out in Zookeys ( that revises the taxonomy of the very rare and cryptic ant genus Proceratium in China. We recognized 8 species from China and described 3 of them as new to science. The most spectacular species from Yunnan we named Proceratium shohei in honor of Dr. Shohei Suzuki (1979-2016), a marine scientist from OIST who lost his life in a tragic research diving accident. The study was led by our colleague Michael Staab, and included Paco and Cong from the lab, along with Zheng-Hui Xu from China.

This study continues our lab’s line of research integrating x-ray microtomography (micro-CT) scanning, computer-based 3D reconstructions, and several downstream 3D data products (such as 3D surfaces and videos) into ant systematics. We used virtual 3D surface models based on micro-CT scans for in-depth comparative analyses of specimen morphology in order to overcome the difficulties of examining the rare and valuable physical material. Since these ants are extremely hairy, thus often very dirty, we basically “shaved” them virtually.


New paper on global ant diversity patterns

We have a new paper out in Nature Communications on testing hypotheses for latitudinal gradients in ants. This is the first paper to really present and analyze the full scope of the GABI database of all ant species distributions. To complement the species range data, we did a very extensive phylogenetic and dating analysis, including implementing the fossilized birth-death process with 500 fossil taxa informing the dating. We analyzed the geographic and phylogenetic data together to test hypotheses for the latitudinal gradient, including variation in diversification rate and time. We generally found the latter to be most consistent with explaining the gradient.

We also did a complementary study focusing on Pheidole, which deals with emergence of the gradient on more recent timescales. A preprint of that one is available on bioarxiv.

OIST minisymposium on using advanced imaging techniques to study evolution of ant phenotypes

Last week our lab hosted an OIST Mini Symposium titled “Advances in imaging, quantifying, and understanding the evolution of ant phenotypes” organized by Evan Economo and Francisco Hita Garcia. The aim of the symposium was to gather a small but selected group of leading researchers interested in the evolution of ant phenotypes with a strong focus on the use of x-ray microtomography (micro-CT). Our list of speakers covered experts in the fields of molecular and morphological systematics, anatomy, functional morphology, comparative morphology, adaptive trait evolution, reproductive biology, linear and geometric morphometrics, and paleontology. All invitees gave outstanding talks and presented published or ongoing research in great detail and with beautiful 2D or 3D illustrations and/or videos.

Some talks provided conceptual and technical backgrounds and perspectives of how to use micro-CT for ant morphology, how to better integrate next-generation phenomics into systematics, palaeontology, and evolutionary biology, and how to use micro-CT data and downstream 3D applications for education and public outreach.

A strong focus of the symposium was the use of micro-CT for ant functional morphology, biomechanics, and the evolution of complex phenotypes. Some guests also showed recent advances in histology-based anatomy and reproductive biology, and shared ideas of how to combine traditional histology with modern 3D imaging technologies, such as micro-CT.

We also had a session focusing on the use of 2D linear and 3D geometric morphometrics and their application for ant phylogenetics, taxonomy, trait evolution, and more generally how to use large 3D phenotypical datasets to answer questions in evolutionary biology.

One afternoon was completely devoted to practical demonstrations of how to use 3D data. Our lab shared how we scan data post-processing, 3D virtual reconstructions, 3D animations, virtual/augmented reality, 3D printing. It was useful for sharing knowledge of methodology, and stimulating ideas for future directions and applications.

The three-day symposium provided ample opportunities for socializing and chatting about on-going and potential collaborations, discussions about methods and research results, as well as brainstorming about future directions for the field. At the same time our invitees got the chance to enjoy Japanese and Okinawan culture and cuisine and show off their Karaoke skills.

Invited speakers:
Phil Barden (New Jersey Institute of Technology)
Johan Billen (KU Leuven)
Benjamin Blanchard (U. Chicago and Field Museum)
Ayako Gotoh (Konan U.)
Yoshiaki Hashimoto (U. Hyogo, Museum of Nature and Human Activities, Hyogo)
Fuminori Ito (Kagawa U.)
Roberto Keller (Museu Nacional de História Natural e da Ciência)
Andrea Lucky (U. Florida)
Christian Peeters (U. Pierre et Marie Curie)
Shauna Price (Field Museum)
Andrew Suarez (U. Illinois)

Internal speakers:
Evan P. Economo
Georg Fischer
Nick Friedman
Francisco Hita Garcia
Adam Khalife (U. Pierre et Marie Curie and OIST)

ESJ 2018 in Sapporo

Several Arilab members attended the 65th Annual Meeting of the Ecological Society of Japan in Sapporo, Hokkeido, from March 14th to march 18th. It was a great opportunity for students, postdocs, and staff scientists to present Arilab research to a broader Japanese audience. At the same time, it was a good occasion for networking, chatting about potential future collaborations, and learn more about the research done in other labs throughout Japan.

Spearheaded by Nick Friedman and supported by Nao Takashina and Francisco Hita Garcia our lab organized a successful English-speaking symposium with the title “Biodiversity: linking biogeographic pattern and process”.

Masashi Yoshimura also gave an interesting about the OKEON Churamori Project and Yuka Suzuki successfully presented her poster showing her PhD project.

We also enjoyed the local Hokkeido cuisine, especially a visit to the Sapporo Bier Garten!